| MLS Cup Champions (4): | 2001, 2003, 2006, 2007 |
| MLS Cup Appearances (6): | 2001, 2003, 2006, 2007, 2011, 2012 |
| 1/2 Finals Appearances (10): | 2001, 2003, 2006, 2007, 2009, 2011, 2012, 2013, 2017, 2023 |
| 1/4 Finals Appearances (2011-) (5) | 2011, 2012, 2013, 2017, 2023 |
| Playoff Appearances (15): | 1996, 2002, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2011, 2012, 2013, 2017, 2023 |
| Supporters Shield (1): | 2005 |
| US Open Cup (2): | 2018, 2023 |
| Concacaf Championships (0): | none |
| Conference Championships (3): | 2003, 2005, 2008 |
| Most Valuable Player (0): | none |
| Goal of the Year (4): | 1996 -- Eric Wynalda |
| 2005 -- Dwayne De Rosario | |
| 2006 -- Dwayne De Rosario | |
| 2006 -- Brian Ching | |
| Coach of the Year (1): | 2001 -- Frank Yallop |
| 2005 -- Dominic Kinnear | |
| Goalkeeper of the Year (3): | 2002 -- Joe Cannon |
| 2003 -- Pat Onstad | |
| 2005 -- Pat Onstad | |
| Defender of the Year (2): | 1996 -- John Doyle |
| 2001 -- Jeff Agoos | |
| Rookie of the Year (0): | none |
| Young Player of the Year (0): | none |
| Individual Fair Play (2): | 2005 -- Ronald Cerritos |
| 2017 -- DaMarcus Beasley | |
| Team Fair Play (1): | 2001 |
| Comeback Player of the Year (2): | 2001 -- Troy Dayak |
| 2004 -- Brian Ching | |
| Newcomer of the Year (0): | none |
| Save of the Year (1): | 2009 -- Pat Onstad |
| Humanitarian of the Year (1): | 2000 -- Abdul Thompson Conteh |
| MLS Cup MVP (2): | 2006 -- Brian Ching |
| 2007 -- Dwayne De Rosario | |
| Goals Scored (1): | 2004 -- Brian Ching (t) |
| Assists (4): | 2005 -- Dwayne De Rosario |
| 2009 -- Brad Davis (t) | |
| 2011 -- Brad Davis | |
| 2020 -- Darwin Quintero (t) | |
| Goals Against Average (3): | 2005 -- Pat Onstad |
| 2007 -- Pat Onstad | |
| 2008 -- Pat Onstad | |
| Wins (3): | 2002 -- Joe Cannon |
| 2005 -- Pat Onstad | |
| 2009 -- Pat Onstad | |
| Saves (0): | none |
| Shutouts (3): | 2002 -- Joe Cannon |
| 2003 -- Pat Onstad (t) | |
| 2005 -- Pat Onstad | |
| Points (0): | none |
| Goalkeeper (2): | 2003 -- Pat Onstad |
| 2005 -- Pat Onstad | |
| Defender (6): | 1996 -- John Doyle |
| 2001 -- Jeff Agoos | |
| 2002 -- Wade Barrett | |
| 2005 -- Danny Califf | |
| 2007 -- Eddie Robinson | |
| 2009 -- Geoff Cameron | |
| Midfielder (10): | 1999 -- Eddie Lewis |
| 2002 -- Ronnie Ekelund | |
| 2003 -- Landon Donovan | |
| 2005 -- Dwayne De Rosario | |
| 2006 -- Ricardo Clark, Dwayne De Rosario | |
| 2007 -- Dwayne De Rosario | |
| 2009 -- Stuart Holden | |
| 2011 -- Brad Davis | |
| 2023 -- Hector Herrera | |
| Forward (2): | 1997 -- Ronald Cerritos |
| 2004 -- Brian Ching | |